Youping Deng

This study maps viral RNA signals across cell types and tissues in colorectal cancer, identifying significant viral associations with specific cell types and tissue conditions.

The paper introduces ANA, an agentic AI framework that improves cross-site generalization in ASD fMRI classification by reducing data leakage and achieving higher accuracy than existing models.

sRNAfrag quantifies and analyzes small RNA fragmentation across biotypes, detecting miRNA and snoRNA fragment conservation across species.

SARS2Mutant is a database that provides analysis of SARS-CoV-2 amino-acid mutations to aid in vaccine and drug development.

This study analyzes NSP1 mutations across global SARS-CoV-2 sequences, identifying E87D as a significant mutation linked to protein flexibility and stability changes.

The paper analyzes SARS-CoV-2 mutations from 10.5 million sequences to identify stable mutations and their geographic distribution, providing insights for vaccine and diagnostic development.

The paper establishes reference samples with high-coverage whole-genome sequencing to create truth sets for somatic mutation and germline variant detection using NGS technologies.

The paper evaluates epigenetic methods using reference materials, finding high concordance between assays and differences in performance across platforms.