Author

Johan Garssen

Utrecht UniversityORCID 0000-0002-8678-9182Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:virus· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:proteomics· 1

Frequent Co-Authors

Alberto Paolo TondaiD· 3 shared Alejandro Lopez‐RinconiD· 3 shared Aletta D. KraneveldiD· 3 shared Carmina Angelica Perez-RomeroiD· 3 shared Eric ClaasseniD· 3 shared Lucero Mendoza‐MaldonadoiD· 3 shared Alinda J. Berends· 1 shared Anouk BoudewijniD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersBioinformatics

Alberto Paolo TondaORCID

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Author profile →

4 papers

Recent·Most cited

Ex vivo autologous immune cell assay to study modulation of type 2 Inflammation by processed- or novel food extracts in peanut allergy

Robine Janssen, Alinda J. Berends, Marit Zuurveld, Severina Terlouw, G.A.M. de Jong, Dianne Somhorst, Anouk Boudewijn, Sharon Veenbergen, Harry J. Wichers, Johan Garssen, Shanna Bastiaan‐Net, Rosalinde Masereeuw, Nicolette W. de Jong, Linette E. M. Willemsen

This paper introduces an ex vivo assay to study how peanut extracts and novel foods modulate type 2 inflammation in peanut-allergic patients.

bioRxiv · Oct 30, 2026 · PreprintImmunology

SARS-CoV-2 Omicron Variant AI-based Primers

Carmina Angelica Perez-Romero, Alberto Paolo Tonda, Lucero Mendoza‐Maldonado, John A. MacSharry, Joanna Szafran, Eric Claassen, Johan Garssen, Aletta D. Kraneveld, Alejandro Lopez‐Rincon

This paper uses AI to develop a primer set for the SARS-CoV-2 Omicron variant, validated in silico and preliminarily in lab tests.

bioRxiv · Jan 21, 2022 · PreprintBioinformatics

Design of Specific Primer Sets for the Detection of SARS-CoV-2 Variants of Concern B.1.1.7, B.1.351, P.1, B.1.617.2 using Artificial Intelligence

Carmina Angelica Perez-Romero, Alberto Paolo Tonda, Lucero Mendoza‐Maldonado, Etienne Coz, Patrick Tabeling, Jessica Vanhomwegen, Eric Claassen, Johan Garssen, Aletta D. Kraneveld, Alejandro Lopez‐Rincon

The paper designs specific primer sets for SARS-CoV-2 variants using AI, showing high accuracy and potential for multiplexed testing.

bioRxiv · Jan 20, 2021 · PreprintBioinformatics

Design of Specific Primer Set for Detection of B.1.1.7 SARS-CoV-2 Variant using Deep Learning

Alejandro Lopez‐Rincon, Alberto Paolo Tonda, Lucero Mendoza‐Maldonado, Daphne G.J.C. Mulders, Richard Molenkamp, Carmina Angelica Perez-Romero, Eric Claassen, Johan Garssen, Aletta D. Kraneveld

The paper designs a specific primer set for detecting the B.1.1.7 SARS-CoV-2 variant using deep learning, achieving >99% accuracy with in-silico validation.

Scientific Reports · Jan 13, 2021Peer-reviewedBioinformatics