Benjamin Misselwitz

StrainCascade: An automated, modular workflow for high-throughput long-read bacterial genome reconstruction and characterization

StrainCascade automates bacterial genome reconstruction and characterization using long-read sequencing, enabling high-resolution comparative genomics and functional analysis.

Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions

The paper shows how spatial structure in the gut microbiota emerges through bacterial growth in the matrix of gut content.

Child health, nutrition and gut microbiota development during the first two years of life; study protocol of a prospective cohort study from the Khyber Pakhtunkhwa, Pakistan

The paper describes a prospective cohort study to assess gut microbiota development and associated factors in infants during the first two years of life in Pakistan.