Dilip Raj Panthee

This paper improves detection power of BSA-Seq algorithms by estimating genomic region-level thresholds, reducing sequencing costs by at least fivefold.

This paper modifies a BSA-Seq analysis method to identify trait-associated genomic regions without requiring parental genome sequences, demonstrating its effectiveness on a public dataset.

The paper analyzes RNA-Seq data from tomato lines resistant to bacterial spot to identify differentially expressed genes and sequence variations associated with resistance.

PyBSASeq is a new algorithm for BSA-Seq data analysis that improves sensitivity and reduces sequencing costs by identifying trait-associated SNPs with lower coverage.

The paper describes a method to recharge used spin columns or build homemade ones using filter paper for low-throughput nucleic acid purification, showing its effectiveness for various nucleic acids.