Author

Len A. Pennacchio

Lawrence Berkeley National LaboratoryORCID 0000-0002-8748-3732Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 16 Developmental Biology· 8 Bioinformatics· 2 Genetic & Genomic Medicine· 2 Genetics· 2 Neuroscience· 2

Signature Assays, Organisms & Methods

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Organism:mouse· 23 Research Focus:gene regulatory network inference· 21 Approach:statistical model· 21 Approach:experimental assay· 15 Assay:ChIP-seq· 14 Research Focus:differential expression· 11 Organism:human· 9 Assay:scRNA-seq· 7

Frequent Co-Authors

Axel ViseliD· 22 shared Diane E. DickeliD· 21 shared Jennifer A. AkiyamaiD· 11 shared Ingrid Plajzer-Frick· 10 shared Michael KosickiiD· 10 shared Catherine S. Novak· 9 shared Brandon J. MannioniD· 8 shared Iros BarozziiD· 8 shared

Activity by Year

2017-2025 · peak 8/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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22 shared papersGenomics

Axel ViselORCID

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32 papers

Recent·Most cited

GenomicsNature NeurosciencePeer-reviewedFeb 12, 2018

Single nucleus analysis of the chromatin landscape in mouse forebrain development

Sebastian Preißl, Rongxin Fang, Hui Huang…·Bing Ren

The paper uses single nucleus ATAC-seq to analyze chromatin accessibility in mouse forebrain development, identifying cell-type-specific regulatory sequences and transcriptional regulators.

332 citationstop 1%

mousescATAC-seq

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BioinformaticsbioRxivPreprintApr 10, 2017

✦ In-depth digest

De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing

Marcus H. Stoiber, Joshua Quick, Rob S Egan…·James B. Brown

Base-by-base tests of raw nanopore current, native versus amplified DNA, detect 4mC, 5mC and 6mA without training data, recovering seven methylases' motifs (AUC 0.62–0.97).

276 citations

E. colilong-read sequencing

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