Gaurav D. Moghe

The paper develops FuncZymeDB-BAHD and FuncPred tools to systematically annotate BAHD acyltransferase functions in plants using LLMs and phylogenomics, achieving high prediction accuracy and expanding existing databases.

FuncFetch uses an LLM to mine enzyme-substrate interactions from manuscripts, achieving high precision and recall in extracting functional data.

metaPathwayMap predicts metabolic pathway neighborhoods from untargeted metabolomics peaks using structural class predictions, enhancing pathway understanding in model and non-model species.

The paper evaluates intergenic transcribed regions (ITRs) in Poaceae species to determine if they represent functional genes or noisy transcription, finding most ITRs lack conservation and are likely nonfunctional.

The paper investigates the evolution of a hyper-diverse acylsugar biosynthetic pathway in the Solanaceae family using multi-omic approaches, revealing mechanisms of molecular innovation over 100 million years.