Pia Keukeleire

The paper introduces standardized formats and tools for processing MPRA data to improve reproducibility and integration across studies.

This paper introduces ccMPRA, a method that combines Capture-C and MPRA to study promoter interactions and regulatory activity, identifying enhancers and silencers.

The paper identifies functional cis-regulatory elements in three human cell types using lentiMPRAs and develops predictive models for CRE function.

This paper improves methylation-based cell type deconvolution of cfDNA by introducing CelFEER, which achieves higher accuracy in estimating cell type proportions and detects significant differences in skeletal muscle cfDNA between ALS patients and controls.