Andrzej Koliński

This paper introduces a new protein-protein docking method that allows for large-scale backbone flexibility using coarse-grained Monte-Carlo simulations, achieving acceptable model quality in proof-of-concept tests.

The paper describes a workflow to refine protein-peptide complex structures from C-alpha models to high-resolution all-atom models using MODELLER and RosettaFlexPepDock.

The paper presents protocols for simulating protein structure flexibility using CABS-flex and SURPASS, showing CABS-flex's high accuracy compared to experimental and MD data.