Author

Daniel E. Callan

Temple UniversityORCID 0000-0002-8851-6065Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Organism:fungi (other)· 1 Approach:statistical model· 1

Frequent Co-Authors

Anton NekrutenkoiD· 1 shared Aysam GuerleriD· 1 shared Björn Andreas GrüningiD· 1 shared Dannon BakeriD· 1 shared David O. Williams RogersiD· 1 shared Hiram ClawsoniD· 1 shared Jeremy GoecksiD· 1 shared John M. ChiltoniD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Anton NekrutenkoORCID

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1 paper

Recent·Most cited

GenomicsbioRxivPreprintDec 31, 2025

Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study

Anton Nekrutenko, Daniel E. Callan, Marius van den Beek…·Sergei L. Kosakovsky Pond

The paper demonstrates a framework using BRC-Analytics and agentic AI to standardize RNA-seq analysis of fungal pathogens, achieving reproducible results across studies with differing annotations.

DOI 10.64898/2025.12.30.697050

fungi (other)bulk RNA-seq

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