Author

Dan Funck Jensen

Swedish University of Agricultural SciencesORCID 0000-0002-8855-5283Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 4 Assay:bulk RNA-seq· 3 Organism:fungi (other)· 3 Approach:statistical model· 3 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:cell type annotation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Magnus KarlssoniD· 4 shared Mukesh K. DubeyiD· 4 shared Edoardo PiomboiD· 3 shared Ramesh Raju VetukuriiD· 2 shared Aakash ChawadeiD· 1 shared Alma Gustavsson Ruus· 1 shared Anders BrobergiD· 1 shared Georgios D. TzelepisiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersGenomics

Magnus KarlssonORCID

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4 papers

Recent·Most cited

Plant BiologyBMC Plant BiologyPeer-reviewedMay 2, 2025

Plant genotype-specific modulation of Clonostachys rosea-mediated biocontrol of septoria tritici blotch disease on wheat

Sidhant Chaudhary, Mustafa Zakieh, Mukesh K. Dubey…·Magnus Karlsson

The paper identifies SNP markers associated with wheat resistance to septoria tritici blotch and biocontrol efficacy by Clonostachys rosea across 202 wheat genotypes.

10 citations

plant (other)statistical model

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MicrobiologyMicrobiological ResearchPeer-reviewedSep 28, 2024

SREBP-mediated gene expression regulation is essential for the intrinsic fungicide tolerance and antagonism in the fungal biocontrol agent Clonostachys rosea

Edoardo Piombo, Georgios D. Tzelepis, Alma Gustavsson Ruus…·Mukesh K. Dubey

This study investigates the role of SREBPs in Clonostachys rosea, showing that SRE1 deletion reduces fungicide tolerance and antagonism, while SRE2 has no significant effect.

9 citations

fungi (other)bulk RNA-seq

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GenomicsbioRxivPreprintSep 24, 2023

Dicer-mediated RNA silencing is the key regulatory mechanism in the biocontrol fungus Clonostachys rosea-wheat interactions

Edoardo Piombo, Ramesh Raju Vetukuri, Dan Funck Jensen…·Mukesh K. Dubey

This study investigates the role of Dicer-mediated RNA silencing in the interaction between the biocontrol fungus Clonostachys rosea and wheat roots, revealing its impact on gene expression and cross-kingdom regulatory mechanisms.

1 citation

plant (other)fungi (other)

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GenomicsMicrobiology SpectrumPeer-reviewedSep 22, 2021

The role of Dicer-dependent RNA interference in regulating cross-species communication during fungus-fungus interactions

Edoardo Piombo, Ramesh Raju Vetukuri, Anders Broberg…·Mukesh K. Dubey

This study investigates the role of Dicer-dependent RNA interference in mycoparasitism by analyzing transcriptome and secondary metabolome changes in a dcl2 mutant of Clonostachys rosea, revealing cross-species regulatory functions of fungal small RNAs.

26 citations

fungi (other)bulk RNA-seq

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