Author

Emily C. Fogarty

University of ChicagoORCID 0000-0002-8957-9922Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. Murat EreniD· 2 shared Alexander D. LemenzeiD· 1 shared Alexander HenochiD· 1 shared Aubrey R. Odom-MabeyiD· 1 shared Courtney A. GradyiD· 1 shared David AllandiD· 1 shared Elissa Ocke· 1 shared Howard Fan· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersMicrobiology

A. Murat ErenORCID

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2 papers

Recent·Most cited

Defining the Mycobacterium tuberculosis Pangenome and Suggestions for a New Composite Reference Sequence

Poonam Chitale, Elissa Ocke, Aubrey R. Odom-Mabey, Howard Fan, Alexander Henoch, Karla A. Vasco, Emily C. Fogarty, Courtney A. Grady, Alexander D. Lemenze, Pradeep John Kumar, Shannon D. Manning, A. Murat Eren, William Evan Johnson, David Alland

This study generates 50 complete Mtb genomes, identifies core and accessory gene clusters, and proposes a new pangenome reference resource to improve TB research.

bioRxiv · Nov 3, 2025 · PreprintMicrobiology

The genetic and ecological landscape of plasmids in the human gut

Michael Yu, Emily C. Fogarty, A. Murat Eren

The paper develops PlasX to identify plasmids in human gut metagenomes and reveals their ecological and evolutionary patterns across populations.

bioRxiv · Nov 1, 2020 · PreprintBioinformatics