Author

Shannon D. Manning

Michigan State UniversityORCID 0000-0001-9581-0660Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:variant calling· 1 Organism:virus· 1

Frequent Co-Authors

A. Murat EreniD· 1 shared Alexander D. LemenzeiD· 1 shared Alexander HenochiD· 1 shared Aubrey R. Odom-MabeyiD· 1 shared Courtney A. GradyiD· 1 shared David AllandiD· 1 shared Elissa Ocke· 1 shared Emily C. FogartyiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperMicrobiology

A. Murat ErenORCID

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2 papers

Recent·Most cited

Genomic adaptation in group B Streptococcus following intrapartum antibiotic prophylaxis and childbirth

Macy E. Pell, Heather M. Blankenship, Jennifer Angeline Gaddy, H. Dele Davies, Shannon D. Manning

This study identifies genomic adaptations in group B Streptococcus (GBS) following intrapartum antibiotic prophylaxis, showing increased mutation rates and biofilm production in persistent colonizers.

mBio · Feb 4, 2026Peer-reviewedEvolutionary Biology

Defining the Mycobacterium tuberculosis Pangenome and Suggestions for a New Composite Reference Sequence

Poonam Chitale, Elissa Ocke, Aubrey R. Odom-Mabey, Howard Fan, Alexander Henoch, Karla A. Vasco, Emily C. Fogarty, Courtney A. Grady, Alexander D. Lemenze, Pradeep John Kumar, Shannon D. Manning, A. Murat Eren, William Evan Johnson, David Alland

This study generates 50 complete Mtb genomes, identifies core and accessory gene clusters, and proposes a new pangenome reference resource to improve TB research.

bioRxiv · Nov 3, 2025 · PreprintMicrobiology