Author

Colleen Drapek

Howard Hughes Medical InstituteORCID 0000-0002-8977-7101Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Andrew I. Brockman· 1 shared Christophe GaillochetiD· 1 shared Erin E. SparksiD· 1 shared Isaiah W. TayloriD· 1 shared James CadmaniD· 1 shared Jessica H. HennacyiD· 1 shared Nicolas Kral· 1 shared Niko GeldneriD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperPlant Biology

Andrew I. Brockman

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2 papers

Recent·Most cited

A scalable method for modulating plant gene expression using a multispecies genomic model and protoplast-based massively parallel reporter assay

Sania Jevtic, Colleen Drapek, Christophe Gaillochet, Andrew I. Brockman, James Cadman, Timo Flesch, Nicolas Kral

The paper introduces a scalable method to upregulate plant gene expression using a genomic model and MPRA, identifying functional cis-regulatory elements without prior knowledge.

bioRxiv · Dec 5, 2024 · PreprintPlant Biology

Minimum requirements for reprogramming and maintaining cell fate in the Arabidopsis root

Colleen Drapek, Erin E. Sparks, Peter Marhavý, Isaiah W. Taylor, Tonni Grube Andersen, Jessica H. Hennacy, Niko Geldner, Philip N. Benfey

The paper identifies SHORTROOT and CIF2 as sufficient to induce and stabilize an endodermis-like state in Arabidopsis root sub-epidermal cells through non-cell-autonomous signaling.

Nature Plants · Jul 25, 2018Peer-reviewedDevelopmental Biology