Christophe Trefois

COBREXA.jl is a Julia package for scalable constraint-based metabolic modeling, designed for high-performance computing environments and multi-organism community models.

The paper introduces a framework to predict how changes in omics data affect metabolic functions in mammalian cells using curated metabolic tasks and genome-scale networks.

PredictProtein provides protein sequence analysis tools, offering structure and function predictions with updates including deep learning and DNA/RNA/protein binding predictions.

GigaSOM.jl provides a scalable solution for clustering and visualizing large cytometry datasets, achieving high performance with distributed computing.