Jean P. Lhorente

Genome-scale comparative analysis for host resistance against sea lice between Atlantic salmon and rainbow trout

This study identifies candidate genes for sea lice resistance in Atlantic salmon and rainbow trout through genome-wide association studies.

High-throughput single nucleotide polymorphism (SNP) discovery and validation through whole-genome resequencing of hundreds of individuals in Nile tilapia (Oreochromis niloticus)

The paper discovers and validates 50,000 high-quality SNPs in Nile tilapia through whole-genome resequencing of 326 individuals, useful for genomic selection and trait analysis.

Multiple selection signatures in farmed Atlantic salmon adapted to different environments across Hemispheres

The paper identifies selection signatures in Atlantic salmon populations adapted to different environments using haplotype-based statistics, highlighting candidate genes related to growth traits.

Genome-wide patterns of population structure and linkage disequilibrium in farmed Nile tilapia (Oreochromis niloticus)

This study analyzes population structure, linkage disequilibrium, and effective population size in three farmed Nile tilapia populations using SNP data from whole-genome sequencing.

Fine mapping using whole-genome sequencing confirms anti Mullerian hormone as a major gene for sex determination in farmed Nile tilapia (Oreochromis niloticus L.)

The paper uses whole-genome sequencing to fine-map sex determination genes in Nile tilapia, identifying anti-Mullerian hormone as a major gene.

Comparative genomic analysis of three salmonid species identifies functional candidate genes involved in resistance to the intracellular bacteria Piscirickettsia salmonis

The paper identifies 120 candidate genes associated with resistance to Piscirickettsia salmonis in three salmonid species using GWAS and comparative genomics.

Genome-wide association analysis for resistance to infectious pancreatic necrosis virus identifies candidate genes involved in viral replication and immune response in rainbow trout (Oncorhynchus mykiss)

This study identifies genomic regions associated with resistance to IPNV in rainbow trout using GWAS and finds candidate genes related to viral replication and immune response.

Genome-wide association study and low-cost genomic predictions for growth and fillet yield in Nile tilapia (Oreochromis niloticus)

This study performs GWAS and evaluates genomic selection for growth and fillet yield in Nile tilapia using imputed SNP panels, finding imputation improves genomic prediction accuracy.

Whole genome linkage disequilibrium and effective population size in a coho salmon (Oncorhynchus kisutch) breeding population

This paper estimates linkage disequilibrium and effective population size in coho salmon using ddRAD markers, suggesting 75,000 SNPs for association studies and an effective population size of 100 ten generations ago.

Single-step genome-wide association study for resistance to Piscirickettsia salmonis in rainbow trout (Oncorhynchus mykiss)

This study identifies genomic regions and candidate genes associated with resistance to Piscirickettsia salmonis in rainbow trout using a single-step genome-wide association analysis.

Discovery and functional annotation of quantitative trait loci affecting resistance to sea lice in Atlantic salmon

This study identifies and characterizes quantitative trait loci (QTL) affecting resistance to sea lice in Atlantic salmon using genomic and transcriptomic data from a commercial breeding population.

Population genomic structure and genome-wide linkage disequilibrium in farmed Atlantic salmon (Salmo salar L.) using dense SNP genotypes

The paper analyzes population structure and linkage disequilibrium in Chilean farmed Atlantic salmon using SNP genotypes, finding genetic differentiation and varying LD decay across populations.

Novel insights into the genetic relationship between growth and disease resistance in Pacific salmon

This study examines genetic correlations between growth and disease resistance traits in Pacific salmon, finding favorable genetic links between early growth and survival during infection.

Genome-Wide Association Study And Genomic Predictions For Resistance Against Piscirickettsia salmonis In Coho Salmon (Oncorhynchus kisutch) Using ddRAD Sequencing

The paper identifies a SNP associated with resistance to P. salmonis in coho salmon and shows genomic selection models perform similarly to pedigree-based methods.