Author

Agnieszka Szmurło

Warsaw University of TechnologyORCID 0000-0002-9192-7420Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 3 Research Focus:benchmarking· 2 Approach:statistical model· 2 Assay:whole-exome sequencing· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Approach:matrix factorization· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Marek S. WiewiórkaiD· 3 shared Tomasz GambiniD· 3 shared Wiktor KuśmirekiD· 2 shared Paweł StankiewicziD· 1 shared Robert Marek NowakiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

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3 shared papersBioinformatics

Marek S. WiewiórkaORCID

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3 papers

Recent·Most cited

Cloud-native distributed genomic pileup operations

Marek S. Wiewiórka, Agnieszka Szmurło, Paweł Stankiewicz, Tomasz Gambin

The paper presents a distributed pileup algorithm for genomic analysis that improves speed and memory efficiency in cloud environments.

Bioinformatics · Dec 14, 2022Peer-reviewedBioinformatics

SeQuiLa-cov: A fast and scalable library for depth of coverage calculations

Marek S. Wiewiórka, Agnieszka Szmurło, Wiktor Kuśmirek, Tomasz Gambin

SeQuiLa-cov provides a fast and scalable tool for depth of coverage calculations, achieving over 100x speedup compared to existing methods.

GigaScience · Aug 1, 2019Peer-reviewedBioinformatics

Clustering-based optimization method of reference set selection for improved CNV callers performance

Wiktor Kuśmirek, Agnieszka Szmurło, Marek S. Wiewiórka, Robert Marek Nowak, Tomasz Gambin

This paper evaluates reference set selection methods for CNV callers using WES data and finds that clustering-based approaches improve detection performance and efficiency.

bioRxiv · Nov 25, 2018 · PreprintBioinformatics