Author

Thomas Gibbs

Nvidia (United States)ORCID 0000-0002-9196-5830Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Approach:large language model· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Research Focus:variant calling· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Christian DallagoiD· 2 shared Ahmed ElnaggariD· 1 shared Alexander BraceiD· 1 shared Animashree AnandkumariD· 1 shared Arash VahdatiD· 1 shared Arvind RamanathaniD· 1 shared Austin ClydeiD· 1 shared Bharat KaleiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Christian DallagoORCID

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2 papers

Recent·Most cited

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.

Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael Irvin, Defne Gorgun, Natalia Vassilieva, J. Gregory Pauloski, , Arvind Ramanathan

GenSLMs use large language models to analyze SARS-CoV-2 genomes, enabling rapid identification of variants of concern and providing insights into evolutionary dynamics.

The International Journal of High Performance Computing Applications · Oct 27, 2023Peer-reviewedBioinformatics

ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing

Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, T. Fehér, Christoph M. Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost

This paper trains and evaluates language models on protein sequences to predict structural and localization features, achieving state-of-the-art results without evolutionary information.

IEEE Transactions on Pattern Analysis and Machine Intelligence · Jul 7, 2021Peer-reviewedBioinformatics