James Y. H. Li

spCorr: flexible and scalable inference of spatially varying correlation in spatial transcriptomics

spCorr identifies spatially varying gene correlations in spatial transcriptomics data, revealing biologically meaningful patterns and improving detection power while controlling FDR.

FOXP Genes Regulate Purkinje Cell Diversity in Cerebellar Development and Evolution

The paper identifies Foxp genes as regulators of Purkinje cell diversity in cerebellar development and evolution, showing their role in subtype specification and species-specific cerebellar organization.

Integrated single-cell transcriptomic and epigenetic analyses of cell-state transition and lineage commitment in the embryonic mouse cerebellum

The paper integrates single-cell RNA and ATAC sequencing to analyze cell-state transitions and lineage commitment in the embryonic mouse cerebellum, identifying regulatory elements and validating gene regulatory networks.

Defining developmental diversification of diencephalon neurons through single-cell gene expression profiling

This study uses single-cell RNA sequencing to define the developmental diversification of diencephalon neurons in mice, identifying cell types, trajectories, and gene regulatory networks.

Specification of diverse cell types during early neurogenesis of the mouse cerebellum

The paper uses single-cell RNA sequencing to identify cell types and developmental trajectories in the mouse cerebellum, revealing new transcriptional programs and subpopulations involved in cerebellar formation.