Author

Yuxin Yin

UConn HealthORCID 0009-0005-5377-4928Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Assay:spatial transcriptomics· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Research Focus:spatial domain detection· 2 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1

Frequent Co-Authors

Dongyuan SongiD· 3 shared Xu SuiD· 2 shared Aarya DalaliD· 1 shared Chenxin Flora JiangiD· 1 shared Dong CheniD· 1 shared James Y. H. LiiD· 1 shared Jingyi Jessica LiiD· 1 shared Lingzhen MengiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersBioinformatics

Dongyuan SongORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 28, 2026

Trustworthy super-resolution reconstruction across spatial omics modalities

Menghan Li, Xutao Wang, Xu Su…·Dongyuan Song

This paper introduces spEnhance, a computational framework that improves spatial resolution and reliability of spot-level spatial omics data across multiple modalities.

DOI 10.64898/2026.09.25.754471

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 12, 2026

spAlignDE unifies cross-sample and cross-modal spatial alignment with mismatch-aware differential expression

Xu Su, Wang Yu, Lingzhen Meng…·Dongyuan Song

spAlignDE aligns spatial omics data across samples and modalities, improving differential expression analysis by accounting for alignment errors and cell-type composition.

DOI 10.64898/2026.09.05.749632

mousespatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 30, 2025

spCorr: flexible and scalable inference of spatially varying correlation in spatial transcriptomics

Chenxin Flora Jiang, Yuxin Yin, Paul Robson…·Dongyuan Song

spCorr identifies spatially varying gene correlations in spatial transcriptomics data, revealing biologically meaningful patterns and improving detection power while controlling FDR.

DOI 10.1101/2025.09.30.679684

spatial transcriptomicsstatistical model

𝕏 PostBluesky