Author

Carrie A. Whittle

Harvard UniversityORCID 0000-0002-9331-0520Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Organism:non-human primate· 1

Frequent Co-Authors

Cassandra G. M. ExtavouriD· 3 shared Arpita KulkarniiD· 1 shared Austen A. BarnettiD· 1 shared Guillem YllaiD· 1 shared Nina ChungiD· 1 shared Sayuri TomonariiD· 1 shared Sumihare NojiiD· 1 shared Takahito WatanabeiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersGenetics

Cassandra G. M. ExtavourORCID

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3 papers

Recent·Most cited

Evidence for non-optimal codon choice in highly transcribed sex-biased genes of Drosophila melanogaster

Carrie A. Whittle, Cassandra G. M. Extavour

The paper shows that non-optimal codons are preferentially used in sex-biased genes of Drosophila melanogaster and are linked to protein disorder.

Genome Biology and Evolution · Apr 11, 2026Peer-reviewedGenetics

Establishment of CRISPR/Cas9-based knock-in in a hemimetabolous insect: targeted gene tagging in the cricket Gryllus bimaculatus

Yuji Matsuoka, Taro Nakamura, Takahito Watanabe, Austen A. Barnett, Sayuri Tomonari, Guillem Ylla, Carrie A. Whittle, Sumihare Noji, Taro Mito, Cassandra G. M. Extavour

The paper establishes a CRISPR/Cas9 method for targeted gene knock-in in the cricket Gryllus bimaculatus, enabling functional genetic studies in a hemimetabolous insect.

Development · Nov 8, 2024Peer-reviewedDevelopmental Biology

Adaptation of codon and amino acid use for translational functions in highly expressed cricket genes

Carrie A. Whittle, Arpita Kulkarni, Nina Chung, Cassandra G. M. Extavour

The paper analyzes codon and amino acid usage in highly expressed cricket genes to understand translational functions and their adaptation across tissues and sexes.

BMC Genomics · Apr 6, 2021Peer-reviewedGenomics