Yizhong Wang

STREAM infers enhancer-driven gene regulatory networks from single-cell RNA-seq and ATAC-seq data, showing improved performance in TF recovery and enhancer-gene discovery.

TESA improves TFBS identification in ChIP-exo data by integrating nucleotide-resolution signal with a two-stage alignment framework, showing higher accuracy in E. coli datasets.

CEMIG predicts cis-regulatory motifs from ATAC-seq data, outperforming existing methods and identifying cell-type-specific and shared TF motifs in GM12878 and K562 cells.