Anne Y. Fennell

PhytoFam automates plant gene family analysis through a Nextflow pipeline, integrating multiple tools for homolog detection, orthology assignment, and phylogenetic reconstruction.

The paper examines how terroir and rootstock influence leaf shape in grapevines, identifying a specific morphological feature affected by these factors.

TESA improves TFBS identification in ChIP-exo data by integrating nucleotide-resolution signal with a two-stage alignment framework, showing higher accuracy in E. coli datasets.

The paper presents the genome assembly of Chambourcin, a hybrid grapevine, along with gene models, orthologs, transcription factors, and SSRs.

IRIS-DGE is a server-based tool for differential gene expression analysis that integrates multiple R-based methods and provides interactive visualizations for RNA-seq data.