Axel Janke

Species delimitation using genome-wide estimates of Dxy and Fst

The paper uses genome-wide Dxy and Fst metrics to identify species boundaries in mammals, finding high accuracy thresholds and suggesting taxonomic revisions.

Chromosome-level genome assembly of the lemon sole Microstomus kitt (Pleuronectiformes: Pleuronectidae)

The paper presents a chromosome-level genome assembly for the lemon sole, achieving high completeness and contiguity using PacBio HiFi sequencing.

DIST: Distance-based Inference of Species Trees

The paper introduces DIST, a method to infer species trees from population-level distance matrices, showing it is statistically consistent even in anomaly zones.

Whole-genome re-sequencing of the Baikal seal and other phocid seals for a glimpse into their genetic diversity, demographic history, and phylogeny

The paper re-sequences genomes of Baikal seals and other phocid seals to assess genetic diversity, demographic history, and phylogeny.

Calculating and interpreting FST in the genomics era

The paper introduces a method to calculate and interpret FST using sequence data, even with small sample sizes, and provides tools for implementation.

High-speed whole-genome sequencing of a Whippet: Rapid chromosome-level assembly and annotation of an extremely fast dog's genome

The paper presents a high-speed whole-genome sequencing and chromosome-level assembly of a Whippet, achieving a high-quality genome in under a week.

Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)

The paper presents a high-quality, near chromosome-level genome assembly of the snake pipefish and reports on its repetitive content and demographic history.

SambaR: an R package for fast, easy and reproducible population-genetic analyses of biallelic SNP datasets

SambaR streamlines population-genetic analysis of biallelic SNP datasets by automating quality control, analysis, and visualization with minimal commands.

Chromosome-level genome assembly of a benthic associated Syngnathiformes species: the common dragonet, Callionymus lyra

The paper presents a chromosome-level genome assembly of Callionymus lyra using long-read and short-read sequencing, resulting in a high-quality reference genome.

Biodiversity genomics of small metazoans: high quality de novo genomes from single specimens of field-collected and ethanol-preserved springtails

This study generates high-quality de novo genomes from single ethanol-preserved springtail specimens using a new amplification-based protocol, achieving over 95% BUSCO completeness.