Author

Thomas Rey

Centre National de la Recherche ScientifiqueORCID 0000-0002-9454-074XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Organism:Arabidopsis· 1 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Bernard DumasiD· 3 shared Aurélien Amiel· 2 shared Clément NicolleiD· 2 shared Mohamed ZouaouiiD· 2 shared Quentin Bazerque· 2 shared Alice Penrose· 1 shared Amélie PereziD· 1 shared Céline VandecasteeleiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersPlant Biology

Bernard DumasORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

A root pathogen drives rhizosphere enrichment of antagonistic Pseudomonas and induces production of an antimicrobial metabolite

Mohamed Zouaoui, Marie Solau, Aurélien Amiel, Alice Penrose, Jean Belleville, Quentin Bazerque, Sylvie Fournier, Amélie Perez, Laurent Camborde, Elodie Gaulin, Thomas Rey, Bernard Dumas

This study shows that a root pathogen activates antimicrobial production in beneficial bacteria, enhancing plant defense against itself.

bioRxiv · Sep 8, 2026 · PreprintPlant Biology

A Galbonolide producing Streptomyces reconfigures the plant root microbiota by activating salicylate-dependent defence metabolism

Clément Nicolle, Mohamed Zouaoui, Rémi Pendaries, Aurélien Amiel, Quentin Bazerque, Guillaume Marti, Bernard Dumas, Thomas Rey

This study shows Streptomyces AgN23 activates plant immune responses via galbonolides, altering root microbiota composition and secondary metabolism.

bioRxiv · Aug 28, 2026 · PreprintPlant Biology

Genomic adaptation in the CAZyome and specialised metabolism of the plant-associated Streptomyces violaceusniger clade

Damien Gayrard, Marine Veyssière, Clément Nicolle, Kévin Adam, Yves Martinez, Céline Vandecasteele, Marie Vidal, Bernard Dumas, Thomas Rey

This paper sequenced and analyzed the genome of Streptomyces sp. AgN23, revealing its ability to produce auxin, degrade plant cell walls, and synthesize antimicrobials, with these features conserved in the S. violaceusniger clade.

bioRxiv · Oct 25, 2021 · PreprintGenomics