Author

Qiang Zheng

The University of Texas at ArlingtonORCID 0000-0002-9477-8918Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Lori XuiD· 2 shared Xinlei WangiD· 2 shared Zeyu LuiD· 2 shared Feng GaoiD· 1 shared Xue XiaoiD· 1 shared Yuqiu YangiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Lori XuORCID

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2 papers

Recent·Most cited

eTRex Reveals Oncogenic Transcriptional Regulatory Programs Across Human Cancers

Zeyu Lu, Yuqiu Yang, Qiang Zheng, Feng Gao, Lori Xu, Xinlei Wang

The paper develops eTRex, a variational Bayesian model, to analyze 4,819 ATAC-seq datasets and create a pan-cancer atlas of transcriptional regulator profiles, revealing common and context-specific regulators.

bioRxiv · Jan 20, 2026 · PreprintBioinformatics

Assessing NGS-based computational methods for predicting transcriptional regulators with query gene sets

Zeyu Lu, Xue Xiao, Qiang Zheng, Xinlei Wang, Lin Xu

This paper reviews and benchmarks NGS-based computational methods for predicting transcriptional regulators using query gene sets, finding that BART, ChIP-Atlas, and Lisa perform best.

bioRxiv · Feb 1, 2024 · PreprintBioinformatics