Author

Shun Minatsuki

The University of TokyoORCID 0000-0002-9543-5503Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

Atsumasa KurozumiiD· 2 shared Masamichi ItoiD· 2 shared Ryohei Tanaka· 2 shared Sosuke Hosokawa· 2 shared Takayuki IsagawaiD· 2 shared Toshinaru KawakamiiD· 2 shared Ariunbold Chuluun-ErdeneiD· 1 shared Christian StockmanniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Atsumasa KurozumiORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS ONEPeer-reviewedMar 6, 2026

PAH-former: Transfer Learning for Efficient Discovery of Pulmonary Arterial Hypertension-Associated Genes

Toshinaru Kawakami, Sosuke Hosokawa, Masamichi Ito…·Norihiko Takeda

PAH-former uses transfer learning with Geneformer to identify PAH-associated genes by fine-tuning on public PAH lung tissue data and performing in silico perturbation analysis.

DOI 10.1371/journal.pone.0344084

humanscRNA-seq

Cell BiologybioRxivPreprintJan 30, 2026

The REFLEX system enables in vivo identification of perivascular angiogenic macrophages in the heart

Tatsuyuki Sato, Takayuki Isagawa, Toshinaru Kawakami…·Norihiko Takeda

The paper develops REFLEX and HUNTERuni-seq to identify perivascular angiogenic macrophages (PVAMs) that deliver VEGF-A to endothelial cells, showing physical contact is critical for effective signaling.

DOI 10.64898/2026.01.27.702189

mousescRNA-seq