Author

Lisa J. Stubbs

University of Illinois Urbana-ChampaignORCID 0000-0002-9556-1972Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:mouse· 3 Assay:ChIP-seq· 2 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1

Frequent Co-Authors

Christopher H. SewardiD· 4 shared Saurabh SinhaiD· 2 shared Alison M. BelliD· 1 shared Amber LeBlanc· 1 shared Analise M. LeddyiD· 1 shared Ankita SahaiD· 1 shared Charles A. BlattiiD· 1 shared Chih‐Ying CheniD· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBioinformatics

Christopher H. SewardORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

SEAMoD: A fully interpretable neural network for cis-regulatory analysis of differentially expressed genes

Shounak G. Bhogale, Christopher H. Seward, Lisa J. Stubbs, Saurabh Sinha

SEAMoD models gene expression from enhancer sequences and identifies key transcription factors in neural stem cell differentiation.

bioRxiv · Nov 9, 2023 · PreprintBioinformatics

Isolated loss of the AUTS2 long isoform, brain-wide or targeted to Calbindin-lineage cells, generates a specific suite of brain, behavioral and molecular pathologies

Yunshu Song, Christopher H. Seward, Chih‐Ying Chen, Amber LeBlanc, Analise M. Leddy, Lisa J. Stubbs

This study investigates the specific roles of the AUTS2 long isoform in brain development and behavior, showing that its loss leads to distinct pathologies compared to mutations affecting both isoforms.

Genetics · Oct 10, 2023Peer-reviewedGenetics

Site-specific phosphorylation of histone H1.4 is associated with transcription activation.

Ankita Saha, Christopher H. Seward, Lisa J. Stubbs, Craig Andrew Mizzen

The paper shows that phosphorylated H1.4 at serine 187 is enriched at active promoters, contradicting previous views of H1 as a repressor.

International Journal of Molecular Sciences · Nov 23, 2020Peer-reviewedMolecular Biology

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Michael C. Saul, Charles A. Blatti, Wei Cheng Yang, Syed Abbas Bukhari, Hagai Yehoshua Shpigler, Joseph M. Troy, Christopher H. Seward, Laura Gail Sloofman, Sriram Chandrasekaran, Alison M. Bell, Lisa J. Stubbs, Gene E. Robinson, Sihai Dave Zhao, Saurabh Sinha

The paper identifies conserved neurogenomic response toolkits across species using multi-species transcriptomic analysis and systems-level functional grouping.

Genes Brain & Behavior · Jul 2, 2018Peer-reviewedGenomics