Author

Henrique Marcel Yudi de Oliveira Tsuji

Universidade de São PauloORCID 0000-0002-9696-8141Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:metabolomics· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Gabriel Santos AriniiD· 3 shared Norberto Peporine LopesiD· 3 shared R. R. da SilvaiD· 3 shared Daniela Barretto Barbosa TrivellaiD· 2 shared Letícia Veras Costa-LotufoiD· 2 shared Luiz Gabriel MencuciniiD· 2 shared Paula Rezende TeixeiraiD· 2 shared Rafael de FelícioiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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3 shared papersMicrobiology

Gabriel Santos AriniORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Semi-automated monitoring of longitudinal microbial metabolic dynamics: A study case for lignin degradation

João Vitor Guimarães Ferreira, Gabriel Santos Arini, Tiago Cabral Borelli, Isabela Victorino da Silva Amatto, Winner Duque Rodrigues, Igor Sepulveda Rodrigues, Nathália Gonsales da Rosa-Garzon, Izabel Cristina Casanova Turatti, Henrique Marcel Yudi de Oliveira Tsuji, Iasmin Cartaxo Taveira, Livia Soares Zaramela, Norberto Peporine Lopes, Hamilton Cabral, Ricardo Silva

This paper presents a low-cost bioreactor system for monitoring microbial metabolic dynamics in lignin degradation studies using two fungal species.

ACS Omega · Jan 26, 2026Peer-reviewedMicrobiology

Characterization of a marine bacteria through a novel metabologenomics approach

Gabriel Santos Arini, Tiago Cabral Borelli, Elthon Gois Ferreira, Rafael de Felício, Paula Rezende Teixeira, Matheus Pedrino, Franciene Rabiço Oliveira, Guilherme Marcelino Viana de Siqueira, Luiz Gabriel Mencucini, Henrique Marcel Yudi de Oliveira Tsuji, Lucas Sousa Neves Andrade, Leandro M. Garrido, Gabriel Padilla, Alberto Gil-de-la-Fuente, Mingxun Wang, , R. R. da Silva

The paper characterizes a marine bacteria using a metabologenomics approach, linking genomic and metabolomic data to identify a new biosynthetic gene cluster and bioactive compound.

Frontiers in Molecular Biosciences · Mar 20, 2025Peer-reviewedBiochemistry

Optimizing the detection of biological signals through a semi-automated feature selection tool

Gabriel Santos Arini, Luiz Gabriel Mencucini, Rafael de Felício, Luís Guilherme Pereira Feitosa, Paula Rezende Teixeira, Henrique Marcel Yudi de Oliveira Tsuji, Alan César Pilon, Danielle Rocha Pinho, Letícia Veras Costa-Lotufo, Norberto Peporine Lopes, Daniela Barretto Barbosa Trivella, Ricardo Silva

The paper introduces RegFilter, a tool that enhances metabolite detection in DDA mode by dynamically selecting precursor ions and creating custom spectral libraries.

bioRxiv · Aug 7, 2024 · PreprintBioinformatics