This paper introduces MambaWSI, a state space model for whole slide image classification that extracts multi-scale local and global features, achieving better performance than existing methods.

IEEE International Symposium on Biomedical Imaging (ISBI) · Apr 8, 2026Peer-reviewedPathology

dFCExpert: Learning Dynamic Functional Connectivity Patterns with Modularity and State Experts

Tingting Chen, Hongming Li, Hao Zheng, Yong Fan A

dFCExpert learns dynamic functional connectivity patterns from fMRI data using modularity and state experts, showing superior performance on large-scale datasets.

IEEE Transactions on Medical Imaging · Oct 3, 2025Peer-reviewedNeuroscience

SurfNet: Reconstruction of Cortical Surfaces via Coupled Diffeomorphic Deformations

Hao Zheng, Hongming Li, Yong Fan A

SurfNet jointly reconstructs cortical surfaces from MRIs using diffeomorphic deformations, achieving state-of-the-art accuracy and topological correctness.

IEEE Transactions on Medical Imaging · Jul 2, 2025Peer-reviewedNeuroscience

SegCSR: Weakly-Supervised Cortical Surfaces Reconstruction from Brain Ribbon Segmentations

Hao Zheng, Xiaoyang Chen, Hongming Li, Tingting Chen, Peixian Liang, Yong Fan A

This paper introduces a weakly-supervised method for cortical surface reconstruction using brain MRI ribbon segmentations, achieving comparable or better accuracy than supervised methods.

IEEE International Symposium on Biomedical Imaging (ISBI) · Apr 14, 2025Peer-reviewedNeuroscience

A dysmorphic mouse model reveals developmental interactions of chondrocranium and dermatocranium

Susan M. Motch Perrine, M. Kathleen Pitirri, Emily L. Durham, Mizuho Kawasaki, Hao Zheng, Danny Z. Chen, Kazuhiko Kawasaki, Joan T. Richtsmeier

This study uses 3D reconstructions of mouse chondrocranium and dermatocranium to show how a Fgfr2 variant affects their development and interaction.

eLife · Jun 15, 2022Peer-reviewedDevelopmental Biology