Author

Charles Bettembourg

Sanofi (France)ORCID 0000-0002-9829-1883Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Approach:statistical model· 1

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Corinne RocheriD· 1 shared Franck AugéiD· 1 shared Galina BoldinaiD· 1 shared George LutaiD· 1 shared Paul FogeliD· 1 shared

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2021-2021 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Corinne RocherORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 4, 2021

ASIGNTF: AGNOSTIC SIGNATURE USING NTF: A UNIVERSAL AGNOSTIC STRATEGY TO ESTIMATE CELL-TYPES ABUNDANCE FROM TRANSCRIPTOMIC DATASETS

Paul Fogel, Galina Boldina, Corinne Rocher…·Franck Augé

The paper introduces ASigNTF, a method to estimate cell-type abundance from transcriptomic data using non-negative tensor factorization and the Herfindahl-Hirschman index, and provides two new immune cell-type signatures that outperform existing methods.

DOI 10.1101/2021.02.04.429589

bulk RNA-seqstatistical model

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