Alejandro Cisterna‐García

The paper evaluates antimicrobial peptide prediction tools and proposes a standardized evaluation framework to improve comparability and reproducibility.

go3 provides a fast and lightweight Rust-based library for calculating semantic similarity of GO terms and genes, achieving significant speed and memory improvements over existing tools.

The paper introduces scCoExpNets and CovCoExpNets to analyze cell-type specific gene co-expression networks from single-cell RNA-seq data, identifying iron accumulation as a factor in dopaminergic neuron vulnerability in Parkinson's disease.

The paper identifies and replicates epistatic variant-variant interactions in Parkinson's disease across genetically diverse populations using a new pipeline called VARI3.

PhenoExam is an R package and web tool that performs phenotype and disease enrichment analysis on gene sets, detecting significant phenotypic similarities and differences across databases.

The paper introduces GMSCA, a tool to enhance gene multifunctionality predictions in bulk-tissue co-expression networks, revealing new roles for genes like SNCA in oligodendrocytes.

CoExp Web provides a web tool and software for analyzing and sharing co-expression network models.