Author

Sharon C.‐A. Chen

The University of SydneyORCID 0000-0002-9983-6603Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:biophysical modeling· 1 Approach:deep learning· 1 Organism:E. coli· 1 Research Focus:ecology & biodiversity· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Vitali SintchenkoiD· 3 shared Carl J. E. SusteriD· 2 shared Qinning WangiD· 2 shared Rebecca J. RockettiD· 2 shared A Smith· 1 shared Adil A KhaniD· 1 shared Annie J ForsteriD· 1 shared Basel Suliman· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

Vitali SintchenkoORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintNov 4, 2026

COSMOS: integrated vector-pathogen metagenomics for mosquito-borne disease

Annie J Forster, Adil A Khan, Emma Garrett…·Tanya Golubchik

COSMOS integrates vector-pathogen metagenomics to monitor mosquito-borne diseases, detecting pathogens and mosquito communities in field samples with high accuracy.

DOI 10.64898/2026.11.03.763828

metagenomicsdeep learning

MicrobiologybioRxivPreprintNov 8, 2025

Phylogenetic Insights into Antifungal Susceptibility: Comparing Environmental and Clinical Scedosporium and Lomentospora Isolates from Taiwan

Shang-Yi Lin, Yi-Ting Tseng, Khaled Abdrabo El‐Sayid Abdrabo…·Yin‐Tse Huang

This study compares antifungal susceptibility of clinical and environmental Scedosporium and Lomentospora isolates from Taiwan, finding olorofim has consistently low MICs while triazoles show species-specific activity.

DOI 10.1101/2025.11.08.687386

statistical modelhost-pathogen & immune response

MicrobiologybioRxivPreprintMay 7, 2024

STECode: an automated virulence barcode generator to aid clinical and public health risk assessment of Shiga toxin-producing Escherichia coli

Eby M. Sim, Winkie Fong, Carl J. E. Suster…·Vitali Sintchenko

STECode automates virulence barcode generation for Shiga toxin-producing E. coli to assess pathogenic potential from sequencing data.

1 citation

E. coliwhole-genome sequencing

GenomicsApplied and Environmental MicrobiologyPeer-reviewedDec 15, 2017

Genome Sequencing Links Persistent Outbreak Of Legionellosis In Sydney To An Emerging Clone Of Legionella pneumophila ST211

Verlaine Joy Timms, Rebecca J. Rockett, Nathan L. Bachmann…·Vitali Sintchenko

Genome sequencing of Legionella pneumophila isolates from a Sydney outbreak identified an emerging ST211 clone linked to environmental sources and a unique T4ASS element.

16 citations

humanwhole-genome sequencing