Qinning Wang

STECode: an automated virulence barcode generator to aid clinical and public health risk assessment of Shiga toxin-producing Escherichia coli

STECode automates virulence barcode generation for Shiga toxin-producing E. coli to assess pathogenic potential from sequencing data.

A laboratory framework for ongoing optimisation of amplification based genomic surveillance programs

This study develops a framework to optimize sequencing efficiency for genomic surveillance by adjusting primer pooling and sets based on evolving viral populations.

Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis

This study uses multilevel genome typing to analyze Australian Salmonella Enteritidis isolates, finding strong epidemiological links to Asian strains and a local outbreak linked to European isolates.

Elucidation of global and local genomic epidemiology of Salmonella enterica Enteritidis through multilevel genome typing

This study develops a multilevel genome typing method for Salmonella Enteritidis and analyzes 26,670 genomes to reveal global and local genomic epidemiology, including multidrug resistance and outbreak patterns.

Complete microbial genomes for public health in Australia and Southwest Pacific

The paper presents complete microbial genomes for public health in Australia and the Southwest Pacific to enhance global genomic resources and support regional surveillance.

Genome Sequencing Links Persistent Outbreak Of Legionellosis In Sydney To An Emerging Clone Of Legionella pneumophila ST211

Genome sequencing of Legionella pneumophila isolates from a Sydney outbreak identified an emerging ST211 clone linked to environmental sources and a unique T4ASS element.