Author

Winkie Fong

The University of SydneyORCID 0000-0001-6483-1119Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:biophysical modeling· 1 Organism:E. coli· 1 Approach:statistical model· 1 Organism:virus· 1

Frequent Co-Authors

Carl J. E. SusteriD· 2 shared Jessica E. AgiusiD· 2 shared Kerri BasileiD· 2 shared Qinning WangiD· 2 shared Shona ChandraiD· 2 shared Vitali SintchenkoiD· 2 shared Alexander P. DrewiD· 1 shared Basel Suliman· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersMicrobiology

Carl J. E. SusterORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 7, 2024

STECode: an automated virulence barcode generator to aid clinical and public health risk assessment of Shiga toxin-producing Escherichia coli

Eby M. Sim, Winkie Fong, Carl J. E. Suster…·Vitali Sintchenko

STECode automates virulence barcode generation for Shiga toxin-producing E. coli to assess pathogenic potential from sequencing data.

1 citation

E. coliwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintJul 17, 2023

A laboratory framework for ongoing optimisation of amplification based genomic surveillance programs

Connie Lam, Jessica C. Johnson-Mackinnon, Kerri Basile…·Rebecca J. Rockett

This study develops a framework to optimize sequencing efficiency for genomic surveillance by adjusting primer pooling and sets based on evolving viral populations.

1 citation

viruswhole-genome sequencing

𝕏 PostBluesky