Author

Marie‐Dominique Galibert

Centre National de la Recherche ScientifiqueORCID 0000-0003-0095-742XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:simulation· 1 Approach:statistical model· 1

Frequent Co-Authors

Rose-Marie Fraboulet· 2 shared Sébastien CorreiD· 2 shared Yuna BlumiD· 2 shared A. N. RusakovichiD· 1 shared Édouard Cadieu· 1 shared Marc AubryiD· 1 shared Thomas DerrieniD· 1 shared Victor Le Bars· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 28 mutual co-author links

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2 shared papersBioinformatics

Rose-Marie Fraboulet

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2 papers

Recent·Most cited

BioinformaticsPeer Community JournalPeer-reviewedMar 25, 2026

Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework

A. N. Rusakovich, Sébastien Corre, Édouard Cadieu…·Yuna Blum

This paper benchmarks circRNA detection tools using a simulation framework and finds they vary in performance, with limited overlap in detected circRNAs and significant computational efficiency differences.

DOI 10.24072/pcjournal.699

long-read sequencingsimulation

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedFeb 1, 2024

Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks.

Rose-Marie Fraboulet, Yanis Si Ahmed, Marc Aubry…·Yuna Blum

Cirscan identifies differentially active circRNA sponge mechanisms and visualizes circRNA-miRNA-mRNA networks from transcriptomic data.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky