Author

Sébastien Corre

Centre National de la Recherche ScientifiqueORCID 0000-0003-1532-5660Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Marc AubryiD· 2 shared Marie‐Dominique GalibertiD· 2 shared Rose-Marie Fraboulet· 2 shared Yuna BlumiD· 2 shared A. N. RusakovichiD· 1 shared Anaïs M. Quéméner· 1 shared Anaïs Paris· 1 shared Arthur Gautron· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Marc AubryORCID

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3 papers

Recent·Most cited

BioinformaticsPeer Community JournalPeer-reviewedMar 25, 2026

Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework

A. N. Rusakovich, Sébastien Corre, Édouard Cadieu…·Yuna Blum

This paper benchmarks circRNA detection tools using a simulation framework and finds they vary in performance, with limited overlap in detected circRNAs and significant computational efficiency differences.

DOI 10.24072/pcjournal.699

long-read sequencingsimulation

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedFeb 1, 2024

Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks.

Rose-Marie Fraboulet, Yanis Si Ahmed, Marc Aubry…·Yuna Blum

Cirscan identifies differentially active circRNA sponge mechanisms and visualizes circRNA-miRNA-mRNA networks from transcriptomic data.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky

Cancer BiologybioRxivPreprintJul 8, 2020

Gain-of-function CRISPR screens identify tumor-promoting genes conferring melanoma cell plasticity and therapy-resistance

Arthur Gautron, Laura Bachelot, Anaïs M. Quéméner…·David Gilot

This study identifies tumor-promoting genes via CRISPR screens that confer melanoma cell plasticity and therapy resistance, showing SMAD3's role in BRAFi-resistance and potential as a therapeutic target.

DOI 10.1101/2020.07.08.193102

humangenetic perturbation / CRISPR

𝕏 PostBluesky