Author

Hassan Sadiq

Stellenbosch UniversityORCID 0000-0003-0192-7134Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Darren Patrick MartiniD· 2 shared Ben MurrelliD· 1 shared Hedwig Nora Nordlinder· 1 shared Maximilian Danielsson· 1 shared Patrick Truong· 1 shared Venkatesh Kumar· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersEvolutionary Biology

Darren Patrick MartinORCID

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2 papers

Recent·Most cited

Evolutionary BiologyThe Journal of Open Source SoftwarePeer-reviewedMar 16, 2026

scoup: Simulate Codon Sequences with Darwinian Selection Incorporated as an Ornstein-Uhlenbeck Process

Hassan Sadiq, Darren Patrick Martin

scoup simulates codon sequences incorporating Darwinian selection as an Ornstein-Uhlenbeck process to bridge phylogenetics and population genetics.

DOI 10.21105/joss.09797

DNA methylationdeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 19, 2025

difFUBAR: Scalable Bayesian comparison of adaptive evolution

Hassan Sadiq, Patrick Truong, Maximilian Danielsson…·Ben Murrell

difFUBAR provides a scalable Bayesian method to compare adaptive evolution across different branch sets in phylogenetic trees, showing computational gains and moderate statistical benefits over existing methods.

DOI 10.1101/2025.05.19.654647

Bayesian inferencebenchmarking

𝕏 PostBluesky