Author

Lucas Auer

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementORCID 0000-0003-0223-9325Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Zoology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Adrien CastineliD· 1 shared Caroline Achard· 1 shared Emmanuelle MoriniD· 1 shared Gabryelle Agoutin· 1 shared Géraldine PascaliD· 1 shared Hélène Quesnel· 1 shared Maelle PomiesiD· 1 shared Olivier BoucheziD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperZoology

Adrien CastinelORCID

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2 papers

Recent·Most cited

ZoologybioRxivPreprintSep 24, 2026

✦ In-depth digest

Late lactation represents the main window for sow-to-piglet transmission of persistent gut strains

Maelle Pomies, Gabryelle Agoutin, Lucas Auer…·Sylvie Combes

Long-read 16S-ITS-23S tracking in 17 sow-piglet families shows maternal putative-strain sharing peaks in late lactation, which supplies most maternally derived strains persisting post-weaning.

DOI 10.64898/2026.09.23.753686

bacteria (other)plant (other)

𝕏 PostBluesky

GenomicsMolecular Plant-Microbe InteractionsPeer-reviewedNov 25, 2019

Transcriptome analysis of apple leaves infected by the rust fungus Gymnosporangium yamadae at two sporulation stages (spermogonia and aecia) reveals specific host responses, rust pathogenesis-related genes and a shift in the phyllosphere fungal community composition

Siqi Tao, Lucas Auer, Emmanuelle Morin…·Sébastien Duplessis

This study uses dual RNA-seq to analyze gene expression in apple leaves and Gymnosporangium yamadae during rust infection, revealing host responses, pathogen genes, and changes in phyllosphere fungal communities.

26 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky