Author

Siqi Tao

Beijing Forestry UniversityORCID 0000-0002-6258-0173Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1

Frequent Co-Authors

Emmanuelle MoriniD· 1 shared Lucas AueriD· 1 shared Qianran Xu· 1 shared Sébastien DuplessisiD· 1 shared Ying‐Mei LiangiD· 1 shared Yonghua ZhangiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 7 mutual co-author links

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1 shared paperGenomics

Emmanuelle MorinORCID

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2 papers

Recent·Most cited

MicrobiologymSystemsPeer-reviewedSep 15, 2025

Functional dynamics reveal the response of the crabapple (Malus sp.) phyllosphere microbiome to Gymnosporangium yamadae infection

Qianran Xu, Yonghua Zhang, Siqi Tao

This study examines how the crabapple phyllosphere microbiome responds to Gymnosporangium yamadae infection through metatranscriptomic analysis, revealing shifts in microbial diversity and functional adaptations.

4 citations

plant (other)metagenomics

𝕏 PostBluesky

GenomicsMolecular Plant-Microbe InteractionsPeer-reviewedNov 25, 2019

Transcriptome analysis of apple leaves infected by the rust fungus Gymnosporangium yamadae at two sporulation stages (spermogonia and aecia) reveals specific host responses, rust pathogenesis-related genes and a shift in the phyllosphere fungal community composition

Siqi Tao, Lucas Auer, Emmanuelle Morin…·Sébastien Duplessis

This study uses dual RNA-seq to analyze gene expression in apple leaves and Gymnosporangium yamadae during rust infection, revealing host responses, pathogen genes, and changes in phyllosphere fungal communities.

26 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky