Author

Yueqi Jin

Peking UniversityORCID 0000-0003-0225-6512Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Organism:fungi (other)· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Ence YangiD· 4 shared Xueyan HuiD· 4 shared Changyu TaoiD· 3 shared Minghao DuiD· 3 shared Yun ZhangiD· 3 shared Jianqi SheiD· 2 shared Jiaming Zhao· 1 shared Juan WangiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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4 shared papersBioinformatics

Ence YangORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 3, 2026

MycoCirc: A Pan-Fungal Multi-Modal Pretrained Model for Fungal circRNA Prediction from Genome Sequence

Xueyan Hu, Yueqi Jin, Juan Wang, Ence Yang

The paper introduces mycoCirc, a pan-fungal model for circRNA prediction from genome sequences, achieving better performance than existing methods across multiple fungal groups.

DOI 10.64898/2026.06.29.735431

fungi (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsDatabasePeer-reviewedJan 1, 2026

TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers

Yun Zhang, Jianqi She, Xueyan Hu…·Ence Yang

The paper develops TEITbase, a database of TE-initiated transcripts in 33 cancer types, identifying 38,995 transcripts and 6,203 tumor-specific ones, with tools for downstream analysis.

1 citation

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintMay 19, 2025

Transposable elements drive species-specific and tissue-specific transcriptomes in human development

Yun Zhang, Jianqi She, Xueyan Hu…·Ence Yang

The paper identifies TE-initiated transcripts across human tissues and embryonic stem cells, showing tissue-specific activation and primate-specific TSSs contributing to gene regulation.

DOI 10.1101/2025.05.19.654775

humanbulk RNA-seq

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MicrobiologyPLoS GeneticsPeer-reviewedMar 6, 2025

Species-specific circular RNA circDS-1 enhances adaptive evolution in Talaromyces marneffei through regulation of dimorphic transition and virulence

Xueyan Hu, Minghao Du, Changyu Tao…·Ence Yang

This study identifies circDS-1, a circular RNA in Talaromyces marneffei, that promotes dimorphic transition and virulence, revealing a novel mechanism for fungal thermal adaptation.

5 citations

fungi (other)long-read sequencing

𝕏 PostBluesky