Author

Arkadeep Banerjee

Tata Institute of Fundamental ResearchORCID 0000-0003-0230-9119Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 1 Approach:mechanistic / dynamical model· 1 Research Focus:protein folding & dynamics· 1 Research Focus:software / tool· 1 Assay:structural biology· 1 Organism:virus· 1

Frequent Co-Authors

Shachi GosaviiD· 2 shared Avijeet KulshresthaiD· 1 shared Digvijay Lalwani PrakashiD· 1 shared Sahil LalliD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

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2 shared papersBiophysics

Shachi GosaviORCID

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2 papers

Recent·Most cited

BiophysicsBiophysical JournalPeer-reviewedAug 1, 2026

The transmembrane domain regulates the kinetics of the SARS-CoV-2 spike conformational transition

Avijeet Kulshrestha, Arkadeep Banerjee, Sahil Lall, Shachi Gosavi

This paper uses molecular dynamics simulations to show that the transmembrane domain (TMD) of SARS-CoV-2 spike regulates the kinetics of S2 conformational transitions by modulating TMD dynamics and coupling with S1.

DOI 10.1016/j.bpj.2026.08.014

virusstructural biology

𝕏 PostBluesky

BiophysicsbioRxivPreprintMay 20, 2026

SuBMIT: A Software Toolkit for Facilitating Simulations of Coarse-Grained Structure-Based Models of Biomolecules.

Digvijay Lalwani Prakash, Arkadeep Banerjee, Shachi Gosavi

SuBMIT generates input files for molecular dynamics simulations of coarse-grained structure-based models using GROMACS and OpenMM/OpenSMOG.

DOI 10.64898/2026.05.18.725912

experimental assaysoftware / tool

𝕏 PostBluesky