Author

Manuel Cáceres

Aalto UniversityORCID 0000-0003-0235-6951Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Research Focus:sequence-to-function modeling· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Veli MäkineniD· 2 shared Alexandru Ioan TomescuiD· 1 shared Jun Ma· 1 shared Leena SalmelaiD· 1 shared Nicola RizzoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Veli MäkinenORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJul 1, 2025

Exploiting uniqueness: seed-chain-extend alignment on elastic founder graphs

Nicola Rizzo, Manuel Cáceres, Veli Mäkinen

This paper introduces a seed-chain-extend alignment workflow using elastic founder graphs to improve sequence-to-graph alignment accuracy and efficiency in pangenomics.

1 citation

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJul 26, 2023

Chaining for Accurate Alignment of Erroneous Long Reads to Acyclic Variation Graphs

Jun Ma, Manuel Cáceres, Leena Salmela…·Alexandru Ioan Tomescu

GraphChainer improves alignment of erroneous long reads to acyclic variation graphs, aligning more reads and total read length than existing tools.

24 citations

humanlong-read sequencing

𝕏 PostBluesky