Y. X. Rachel Wang

scTIE integrates temporal multimodal data and infers gene regulatory relationships predictive of cellular state changes, outperforming existing methods in data integration and biological signal preservation.

scJoint integrates atlas-scale scRNA-seq and scATAC-seq data using transfer learning, achieving higher cell type accuracy and joint visualizations than existing methods.

GenomeDISCO measures concordance between chromosome conformation capture contact maps by smoothing them with random walks, distinguishing biological replicates from different cell types.