Author

Rodolfo A. Salido

University of California San DiegoORCID 0000-0003-0631-2817Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Rob D. KnightiD· 3 shared Karenina SandersiD· 2 shared Aaron F. CarliniD· 1 shared Abbas HakimiD· 1 shared Abubaker PataniD· 1 shared Adam M. FeistiD· 1 shared Alexandra Kueider‐PaisleyiD· 1 shared Alma L. Lastrella· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersMicrobiology

Rob D. KnightORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintApr 28, 2025

A Multi-Organ Murine Metabolomics Atlas Reveals Molecular Dysregulations in Alzheimer's Disease

Simone Zuffa, Celeste Allaband, Vincent Charron‐Lamoureux…·Sarkis K. Mazmanian

The paper presents a multi-organ metabolomics atlas in AD mouse models, identifying dysregulated metabolites and microbiome associations linked to oxidative stress and cognitive impairment.

15 citations

mousemetabolomics

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BioinformaticsmSystemsPeer-reviewedJun 15, 2022

Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings

Victor Cantu, Karenina Sanders, Pedro Belda‐Ferre…·Rob D. Knight

This paper tests cleaning solutions for sentinel cards to improve temporal resolution of SARS-CoV-2 monitoring in schools by distinguishing new infections from persistent viral traces.

2 citations

experimental assay

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Systems BiologyPLoS Computational BiologyPeer-reviewedMar 1, 2019

Model-driven design and evolution of non-trivial synthetic syntrophic pairs

Colton J. Lloyd, Zachary A. King, Troy E. Sandberg…·Adam M. Feist

This paper designs and evolves synthetic syntrophic E. coli pairs using a novel algorithm, revealing metabolic changes that enhance community fitness and guide co-culture optimization.

32 citations

E. colimetagenomics

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