Author

Marie Zgarbová

Palacký University OlomoucORCID 0000-0003-0719-0268Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:protein folding & dynamics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Petr JurečkaiD· 2 shared Eva MatouškováiD· 1 shared Filip LankašiD· 1 shared Ivan ČmeloiD· 1 shared Jiřı́ ŠponeriD· 1 shared Marek Cuker· 1 shared Pavlína Slavníková· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 16 mutual co-author links

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2 shared papersBiophysics

Petr JurečkaORCID

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2 papers

Recent·Most cited

BiophysicsJournal of Chemical Information and ModelingPeer-reviewedAug 25, 2025

Sequence-dependent shape and stiffness of DNA and RNA double helices: hexanucleotide scale and beyond

Pavlína Slavníková, Marek Cuker, Eva Matoušková…·Filip Lankaš

This study presents mechanical properties of DNA and RNA duplexes based on molecular dynamics simulations and proposes a model to predict sequence-dependent shape and stiffness.

7 citations

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

BiophysicsJournal of Chemical Theory and ComputationPeer-reviewedJan 3, 2025

Refinement of the Sugar Puckering Torsion Potential in the AMBER DNA Force Field

Marie Zgarbová, Jiřı́ Šponer, Petr Jurečka

This study refines the AMBER DNA force field parameters to better model A-DNA stability and improve protein-DNA complex modeling.

33 citationstop 1%

DNA methylationstatistical model

𝕏 PostBluesky