Author

Kun Chen

Tongji UniversityORCID 0000-0003-0729-1923Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Kun Chen3 papers · Shanghai Medical College of Fudan University

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Ang Wu· 1 shared Baodan He· 1 shared Chenfei WangiD· 1 shared Di ZhouiD· 1 shared Fan YangiD· 1 shared Fanyu Kong· 1 shared Heng WangiD· 1 shared Jiamin ZhangiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMolecular Biology

Ang Wu

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2 papers

Recent·Most cited

Molecular BiologyProtein & CellPeer-reviewedAug 3, 2025

Genome-Wide Investigation of Transcription Factor Occupancy and Dynamics Using cFOOT-seq

Heng Wang, Ang Wu, Mengchen Yang…·Jiamin Zhang

The paper introduces cFOOT-seq, a method for high-resolution, quantitative detection of TF occupancy across the genome, and demonstrates its application in analyzing TF dynamics and dependencies.

3 citations

ChIP-seqexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 21, 2025

BioinAI: a general bioinformatic framework for multi-level transcriptomic data analysis using multiple semi-agents

Mintian Cui, Shixi Wang, Fan Yang…·Kun Chen

BioinAI introduces a framework with algorithms DeepAdvancer and stNiche to analyze transcriptomic data, revealing inflammatory axes and cellular niches across skin conditions.

DOI 10.1101/2025.07.21.665890

humanbulk RNA-seq

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