Author

Kelly A. Weedmark

Health CanadaORCID 0000-0003-0745-4235Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Aleisha R. ReimeriD· 2 shared Gary Van DomselaariD· 2 shared Morag Graham· 2 shared Natalie KnoxiD· 2 shared Philip MaboniD· 2 shared Rahat ZaheeriD· 2 shared Aaron Petkau· 1 shared Cameron Sieffert· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Aleisha R. ReimerORCID

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedAug 1, 2017

Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations

Eric Marinier, Rahat Zaheer, Chrystal L. Berry…·Gary Van Domselaar

Neptune identifies differentially abundant genomic loci in bacterial populations using k-mer matching and probabilistic models, showing sensitivity and specificity on simulated and real data.

22 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedJun 7, 2017

SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology

Aaron Petkau, Philip Mabon, Cameron Sieffert…·Gary Van Domselaar

SNVPhyl is a phylogenomics pipeline that identifies SNVs and constructs whole-genome phylogenies from WGS data, showing high sensitivity and specificity in outbreak detection.

166 citationstop 1%

bacteria (other)whole-genome sequencing

𝕏 PostBluesky