Author

Aleisha R. Reimer

Public Health Agency of CanadaORCID 0000-0002-1706-7936Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Gary Van DomselaariD· 2 shared Kelly A. WeedmarkiD· 2 shared Morag Graham· 2 shared Natalie KnoxiD· 2 shared Philip MaboniD· 2 shared Rahat ZaheeriD· 2 shared Aaron Petkau· 1 shared Cameron Sieffert· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Gary Van DomselaarORCID

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2 papers

Recent·Most cited

Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations

Eric Marinier, Rahat Zaheer, Chrystal L. Berry, Kelly A. Weedmark, Michael Domaratzki, Philip Mabon, Natalie Knox, Aleisha R. Reimer, Morag Graham, Linda Chui, Laura M. Patterson-Fortin, Jian Zhang, Franco Pagotto, Jeff Farber, J B Mahony, , Gary Van Domselaar

Neptune identifies differentially abundant genomic loci in bacterial populations using k-mer matching and probabilistic models, showing sensitivity and specificity on simulated and real data.

Nucleic Acids Research · Aug 1, 2017Peer-reviewedBioinformatics

SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology

Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly A. Weedmark, Rahat Zaheer, Lee S. Katz, Celine A. Nadon, Aleisha R. Reimer, Eduardo Napoleon Taboada, Robert Gerald Beiko, William Hsiao, , Gary Van Domselaar

SNVPhyl is a phylogenomics pipeline that identifies SNVs and constructs whole-genome phylogenies from WGS data, showing high sensitivity and specificity in outbreak detection.

Microbial Genomics · Jun 7, 2017Peer-reviewedBioinformatics