Philip Mabon

BioHansel rapidly and accurately genotypes bacterial pathogens from WGS data using canonical SNPs, enabling efficient surveillance and outbreak response.

A decentralized open-source web platform lets public health labs run outbreak sequencing pipelines on local compute, keeping data under their own governance while still exchanging results between instances.

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

Neptune identifies differentially abundant genomic loci in bacterial populations using k-mer matching and probabilistic models, showing sensitivity and specificity on simulated and real data.

SNVPhyl is a phylogenomics pipeline that identifies SNVs and constructs whole-genome phylogenies from WGS data, showing high sensitivity and specificity in outbreak detection.

Plasmid Profiler is a pipeline for comparative analysis of plasmid content in WGS data without requiring de novo assembly, using read mapping to a plasmid reference database.