Author

Jean‐Christophe Lagier

Aix-Marseille UniversitéORCID 0000-0003-0771-8245Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Didier RaoultiD· 2 shared Jacques FantiniiD· 2 shared Philippe ColsoniD· 2 shared Pierre‐Edouard FournieriD· 2 shared Aldiouma DialloiD· 1 shared Anthony LevasseuriD· 1 shared Aurélia Caputo· 1 shared Aurélie MorandiD· 1 shared

Activity by Year

2018-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersGenomics

Didier RaoultORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

MicrobiologyJournal of Medical VirologyPeer-reviewedDec 1, 2025

Five-year (2017-2022) evolutionary dynamics of human coronavirus OC43 in southern France based on whole genome next-generation sequencing

Houmadi Hikmat, Céline Boschi, Marine Lefebvre…·Philippe Colson

This study analyzed HCoV-OC43 genomes from southern France between 2017-2022, revealing evolutionary dynamics and amino acid substitutions across three genotypes.

1 citation

humanwhole-genome sequencing

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Evolutionary BiologybioRxivPreprintMar 25, 2025

Long-Term Intra-Host Evolution of SARS-CoV-2 in an Immunocompromised Patient: Recombination and Within-Host Mutations Driving Viral Adaptation

Emilie Burel, Pierre Pontarotti, Jacques Fantini…·Pierre‐Edouard Fournier

This study tracks long-term SARS-CoV-2 evolution in an immunocompromised patient, identifying mutations and recombination events that drive viral adaptation.

DOI 10.1101/2025.03.25.645210

humanwhole-genome sequencing

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GenomicsbioRxivPreprintSep 4, 2020

Genomic diversity and evolution of coronavirus (SARS-CoV-2) in France from 309 COVID-19-infected patients

Anthony Levasseur, Jérémy Delerce, Aurélia Caputo…·Didier Raoult

The paper analyzes 309 SARS-CoV-2 genomes from French patients to identify mutations and their clinical associations, revealing new mutations and evolutionary patterns.

12 citations

whole-genome sequencingstatistical model

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Molecular BiologybioRxivPreprintDec 22, 2018

FilmArray Respiratory Panel Integrated in a field Point Of Care dispositive for the diagnosis of respiratory tract infections in rural areas in Senegal

Hubert Bassène, Sophie Edouard, Georges Diatta…·Cheikh Sokhna

This study evaluates the use of the FilmArray respiratory panel in a field Point of Care (POC) setting in rural Senegal to diagnose respiratory tract infections, finding higher pathogen prevalence in children under 5 and seasonal variations.

DOI 10.1101/502575

humanexperimental assay

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